Metadata-Version: 2.1
Name: abraia
Version: 0.10.1
Summary: Abraia Python SDK
Home-page: https://github.com/abraia/abraia-python
Author: Jorge Rodriguez Araujo
Author-email: jorge@abraiasoftware.com
License: MIT
Platform: UNKNOWN
Description-Content-Type: text/markdown
Requires-Dist: click (>=8.0.3)
Requires-Dist: numpy (>=1.21.0)
Requires-Dist: Pillow (>=9.0.0)
Requires-Dist: tifffile (>=2020.9.4)
Requires-Dist: python-dotenv (==0.19.2)
Requires-Dist: requests (==2.27.1)
Requires-Dist: tqdm (==4.62.3)
Requires-Dist: wget (==3.2)

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# Abraia-Multiple image analysis toolbox

The Abraia-Multiple image analysis toolbox provides and easy and practical way to analyze and classify images directly from your browser. You just need to click on the open in Colab button to start with one of the available notebooks:

* [![](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/abraia/abraia-multiple/blob/master/notebooks/image-classification.ipynb) Deep image classification

* [![](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/abraia/abraia-multiple/blob/master/notebooks/hyperspectral-analysis.ipynb) Hyperspectral image analysis

* [![](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/abraia/abraia-multiple/blob/master/notebooks/hyperspectral-classification.ipynb) Deep hyperspectral image classification

The multiple module provides support for HyperSpectral Image (HSI) analysis and classification.

> MULTIPLE is result and it is being developed by ABRAIA in the [Multiple project](https://multipleproject.eu/).

![classification](https://github.com/abraia/abraia-multiple/raw/master/images/classification.png)

## Configuration

Installed the package, you have to configure your [Id and Key](https://abraia.me/console/) as environment variables:

```sh
export ABRAIA_ID=user_id
export ABRAIA_KEY=user_key
```

On Windows you need to use `set` instead of `export`:

```sh
set ABRAIA_ID=user_id
set ABRAIA_KEY=user_key
```

## Hyperspectral image analysis toolbox

MULTIPLE provides seamless integration of multiple HyperSpectral Image (HSI) processing and analysis tools, integrating starte-of-the-art image manipulation libraries to provide ready to go scalable multispectral solutions.

For instance, you can directly load and save ENVI files, and their metadata.

```python
from abraia import Multiple

multiple = Multiple()

img = multiple.load_image('test.hdr')
meta = multiple.load_metadata('test.hdr')
multiple.save_image('test.hdr', img, metadata=meta)
```

### Upload and load HSI data

To start with, we may [upload some data](https://abraia.me/console/gallery) directly using the graphical interface, or using the multiple api:

```python
multiple.upload_file('PaviaU.mat')
```

Now, we can load the hyperspectral image data (HSI cube) directly from the cloud:

```python
img = multiple.load_image('PaviaU.mat')
```

### Basic HSI visualization

Hyperspectral images cannot be directly visualized, so we can get some random bands from our HSI cube, and visualize these bands as like any other monochannel image.

```python
from abraia import hsi

imgs, indexes = hsi.random(img)
hsi.plot_images(imgs, cmap='jet')
```

### Pseudocolor visualization

A common operation with spectral images is to reduce the dimensionality, applying principal components analysis (PCA). We can get the first three principal components into a three bands pseudoimage, and visualize this pseudoimage.

```python
pc_img = hsi.principal_components(img)
hsi.plot_image(pc_img, 'Principal components')
```

### Classification model

Two classification models are directly available for automatic identification on hysperspectral images. One is based on support vector machines ('svm') while the other is based on deep image classification ('hsn'). Both models are available under a simple interface like bellow:

```python
n_bands, n_classes = 30, 17
model = hsi.create_model('hsn', (25, 25, n_bands), n_classes)
model.train(X, y, train_ratio=0.3, epochs=5)
y_pred = model.predict(X)
```

## Image analysis toolbox

Abraia provides a direct interface to load and save images as numpy arrays. You can easily load the image data and the file metadata, show the image, or save the image data as a new one.

```python
from abraia import Multiple
from abraia.plot import plot_image

multiple = Multiple()

img = multiple.load_image('usain.jpg')
multiple.save_image('usain.png', img)

plot_image(img, 'Image')
```

![plot image](https://github.com/abraia/abraia-multiple/raw/master/images/bolt.png)

Read the image metadata and save it as a JSON file.

```python
import json

metadata = multiple.load_metadata('usain.jpg')
multiple.save_file('usain.json', json.dumps(metadata))
```

    {'FileType': 'JPEG',
    'MIMEType': 'image/jpeg',
    'JFIFVersion': 1.01,
    'ResolutionUnit': 'None',
    'XResolution': 1,
    'YResolution': 1,
    'Comment': 'CREATOR: gd-jpeg v1.0 (using IJG JPEG v62), quality = 80\n',
    'ImageWidth': 640,
    'ImageHeight': 426,
    'EncodingProcess': 'Baseline DCT, Huffman coding',
    'BitsPerSample': 8,
    'ColorComponents': 3,
    'YCbCrSubSampling': 'YCbCr4:2:0 (2 2)',
    'ImageSize': '640x426',
     'Megapixels': 0.273}

### Upload and list files

Upload a local `src` file to the cloud `path` and return the list of `files` and `folders` on the specified cloud `folder`.

```python
import pandas as pd

folder = 'test/'
multiple.upload_file('images/usain-bolt.jpeg', folder)
files, folders = multiple.list_files(folder)

pd.DataFrame(files)
```

![files](https://github.com/abraia/abraia-multiple/raw/master/images/files.png)

To list the root folder just omit the folder value.

### Download and remove files

You can download or remove an stored file just specifying its `path`.

```python
path = 'test/birds.jpg'
dest = 'images/birds.jpg'
multiple.download_file(path, dest)
multiple.remove_file(path)
```

## Command line interface

The Abraia CLI tool provides a simple way to bulk resize, convert, and optimize your images and photos for web. Enabling the conversion from different input formats to get images in the right formats to be used in the web - JPEG, WebP, or PNG -. Moreover, it supports a number of transformations that can be applied to image batches. So you can easily convert your images to be directly published on the web.

### Installation

The Abraia CLI is a Python tool which can be installed on Windows, Mac, and Linux:

```sh
python -m pip install -U abraia
```

The first time you run Abraia CLI you need to configure your API key, just write the command bellow and paste your key.

```sh
abraia configure
```

### Resize images

To compress an image you just need to specify the input and output paths for the image:

```sh
abraia convert images/birds.jpg images/birds_o.jpg
```

![Image compressed from url](https://github.com/abraia/abraia-multiple/raw/master/images/birds_o.jpg)

To resize and optimize and image maintaining the aspect ratio is enough to specify the `width` or the `height` of the new image:

```sh
abraia convert --width 500 images/usain-bolt.jpeg images/usaint-bolt_500.jpeg
```

![Usain Bolt resized](https://github.com/abraia/abraia-multiple/raw/master/images/usaint-bolt_500.jpeg)

You can also automatically change the aspect ratio specifying both `width` and `height` parameters and setting the resize `mode` (pad, crop, thumb):

```sh
abraia convert --width 333 --height 333 --mode pad images/lion.jpg images/lion_333x333.jpg
abraia convert --width 333 --height 333 images/lion.jpg images/lion_333x333.jpg
```

![Image lion smart cropped](https://github.com/abraia/abraia-multiple/raw/master/images/lion_333x333_pad.jpg)
![Image lion smart cropped](https://github.com/abraia/abraia-multiple/raw/master/images/lion_333x333.jpg)

So, you can automatically resize all the images in a specific folder preserving the aspect ration of each image just specifying the target `width` or `height`:

```sh
abraia convert --width 300 [path] [dest]
```

Or, automatically pad or crop all the images contained in the folder specifying both `width` and `height`:

```sh
abraia convert --width 300 --height 300 --mode crop [path] [dest]
```

![beauty casual resized](https://github.com/abraia/abraia-multiple/raw/master/images/beauty-casual_333x500.jpg)
![beauty casual smart cropped](https://github.com/abraia/abraia-multiple/raw/master/images/beauty-casual_500x500.jpg)

### Convert images

The JPEG image format is still the most common format to publish photos on the web. However, converting images to WebP provides a significant improvement for web publishing.

To convert images to a web format (JPEG, PNG, WebP) or between these formats you just need to change the filename extension for the destination file:

```sh
abraia convert garlic.jpg garlic.webp
```


    garlic jpeg
    garlic webp

In addition, you can also convert SVG and PSD files. For instance, converting a SVG to PNG is so simple as to type the command bellow:

```sh
abraia convert bat.svg bat.png
```


    bat svg
    bat png

> The SVG vector image is rendered in a Chrome instance to provide maximum fidelity, and preserving the transparent background.

Moreover, you can easily convert a PSD file (the layered image file used in Adobe Photoshop for saving data) flattening all the visible layers with a command like bellow:

```sh
abraia convert strawberry.psd strawberry.jpg
abraia convert strawberry.psd strawberry.png
```


    white background strawberry
    transparent strawberry

> When the PSD file is converted to JPEG a white background is added automatically, because the JPEG format does not support transparency. Instead, using the PNG or the WebP format you can preserve the transparent background.

Or, convert a batch of Photoshop files with a simple command. Just copy your PSD files to a folder, for instance the `photoshop` folder, and convert all the files in that folder.

```sh
abraia convert photoshop
```

You can also take web from the command line just specifying and url to get the capture.

```sh
abraia convert https://abraia.me screenshot.jpg
```

### Automatic image detection

Simply detect labels (tags), capture text, or detect faces in images (must be in JPEG format).

```sh
abraia detect --labels images/lion.jpg
abraia detect --text images/sincerely-media.jpg
abraia detect --faces images/beauty-casual.jpg
```

## License

This software is licensed under the MIT License. [View the license](LICENSE).


